DNA Binding Motif

						

			
Accessions: CTCF_HUMAN.H10MO.A|M01070 (HOCOMOCO 10)

			
Names: CTCF
Organisms: Homo sapiens
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: More than 3 adjacent zinc finger factors{2.3.3}; CTCF-like factors{2.3.3.50}
Length: 20
Consensus: ygrCCAsyAGrkGGCrsyrk
Weblogo: 
PSSM: P0      A      C      G      T
01     54    167     74    195      y
02     88     96    203    103      g
03    125     46    237     82      r
04     44    399     22     25      C
05      4    479      5      2      C
06    339     15     96     40      A
07     13    311    157      9      s
08     62    212     31    185      y
09    433      8     27     22      A
10      2      1    486      1      G
11    182      2    305      1      r
12     22     12    271    185      k
13      3      4    480      3      G
14     24     15    412     39      G
15     43    402      4     41      C
16    190      8    284      8      r
17     38    284    148     20      s
18     36    192     38    224      y
19    200    117    152     21      r
20     62    107    152    169      k
Binding TFs: CTCF_HUMAN (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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