DNA Binding Motif

Accessions: MF0006.1 (JASPAR 2018)
Names: bZIP cEBP-like subclass
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: METAMODEL
Length: 9
Consensus: rTTrCrtaA
Weblogo:
PSSM: P0 A C G T
01 60.010 8.660 28.620 2.710 r
02 2.710 3.090 1.250 92.950 T
03 0 1.350 6.030 92.610 T
04 40.480 0 54.170 5.350 r
05 3.480 77.620 2.850 16.050 C
06 50.270 4.210 42.670 2.850 r
07 15.680 20.620 4.650 59.040 t
08 65.180 20.730 5.800 8.290 a
09 72.660 7.490 4.370 15.490 A
Publications: Sandelin A, Wasserman W.W. Constrained binding site diversity within families of transcription factors enhances pattern discovery bioinformatics. Journal of molecular biology 338:207-15 (2004). [Pubmed]

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