DNA Binding Motif

Accessions: MF0006.1 (JASPAR 2024)
Names: bZIP cEBP-like subclass
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: METAMODEL
Length: 9
Consensus: rTTrCrtaA
Weblogo:
PSSM: P0 A C G T
01 60.010 8.660 28.620 2.710 r
02 2.710 3.090 1.250 92.950 T
03 0 1.350 6.030 92.610 T
04 40.480 0 54.170 5.350 r
05 3.480 77.620 2.850 16.050 C
06 50.270 4.210 42.670 2.850 r
07 15.680 20.620 4.650 59.040 t
08 65.180 20.730 5.800 8.290 a
09 72.660 7.490 4.370 15.490 A
Publications: Sandelin A, Wasserman W.W. Constrained binding site diversity within families of transcription factors enhances pattern discovery bioinformatics. Journal of molecular biology 338:207-15 (2004). [Pubmed]

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