DNA Binding Motif

Accessions: MA1406.1 (JASPAR 2024)
Names: ATHB-4, ATHB4
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 10
Consensus: yAATsATTGs
Weblogo:
PSSM: P0 A C G T
01 2392 40381 1915 55312 y
02 82255 3298 618 13829 A
03 98348 1291 93 268 A
04 297 333 76 99294 T
05 3466 42828 40460 13246 s
06 99128 66 333 473 A
07 998 228 422 98352 T
08 5565 764 2806 90866 T
09 18045 3599 68409 9947 G
10 12542 33825 35017 18616 s
Type: Heterodimer
Binding TFs: P92953 (Homeobox domain, Homeobox associated leucine zipper, HD-ZIP protein N terminus)
P92953
Publications: Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed]

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