DNA Binding Motif
| Accessions: | PF0088.1 (JASPAR 2024) |
| Names: | GGCNKCCATNK |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | phylogenetic |
| Length: | 11 |
| Consensus: | GGCvGCCATbT |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0 0 492 0 G 02 0 0 492 0 G 03 0 492 0 0 C 04 133 174 135 50 v 05 0 0 416 76 G 06 0 492 0 0 C 07 0 492 0 0 C 08 492 0 0 0 A 09 0 0 0 492 T 10 23 178 135 156 b 11 0 0 117 375 T |
| Binding Sites: | PF0088.1.1 / PF0088.1.14 / PF0088.1.16 / PF0088.1.17 PF0088.1.10 PF0088.1.11 PF0088.1.12 / PF0088.1.3 / PF0088.1.5 PF0088.1.13 PF0088.1.15 / PF0088.1.18 / PF0088.1.9 PF0088.1.19 PF0088.1.2 PF0088.1.20 PF0088.1.4 PF0088.1.6 PF0088.1.7 PF0088.1.8 |
| Publications: | Xie X, Lu J, Kulbokas E.J, Golub T.R, Mootha V, Lindblad-Toh K, Lander E.S, Kellis M. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434:338-45 (2005). [Pubmed] |
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