DNA Binding Motif

Accessions: MA0522.1 (JASPAR 2024)
Names: Tcf3
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 11
Consensus: smCAGCTGCwg
Weblogo:
PSSM: P0 A C G T
01 2717 8489 4689 1366 s
02 8100 6433 1756 972 m
03 0 17261 0 0 C
04 17261 0 0 0 A
05 0 4101 12403 757 G
06 0 16850 411 0 C
07 0 0 0 17261 T
08 0 0 17261 0 G
09 0 12529 3397 1335 C
10 6957 4204 96 6004 w
11 2351 4115 6625 4170 g
Type: Heterodimer
Binding TFs: Q9Z1J1 (HMG (high mobility group) box, N-terminal CTNNB1 binding, Domain of unknown function (DUF1898))
Q9Z1J1
Binding Sites: MA0522.1.13
MA0522.1.9
MA0522.1.11
MA0522.1.12
MA0522.1.1
MA0522.1.10
MA0522.1.14
MA0522.1.15
MA0522.1.16
MA0522.1.17
MA0522.1.18
MA0522.1.19
MA0522.1.2
MA0522.1.20
MA0522.1.3
MA0522.1.4
MA0522.1.5
MA0522.1.6
MA0522.1.7
MA0522.1.8
Publications: Kophengnavong T, Michnowicz J.E, Blackwell T.K. Establishment of distinct MyoD, E2A, and twist DNA binding specificities by different basic region-DNA conformations. Molecular and cellular biology 20:261-72 (2000). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.