DNA Binding Motif

Accessions: 5zjr_A (3D-footprint 20231221)
Names: Homeobox protein abdominal-B
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of AbdB/Exd complex bound to a 'Magenta14' DNA sequence
Length: 7
Consensus: TCGTAAA
Weblogo:
PSSM: P0 A C G T
01 9 9 11 67 T
02 9 69 9 9 C
03 11 9 67 9 G
04 0 0 0 96 T
05 96 0 0 0 A
06 96 0 0 0 A
07 96 0 0 0 A
Binding TFs: 5zjr_A (Homeobox domain)
Binding Sites: 5zjr_C
5zjr_D
Publications: Zeiske T, Baburajendran N, Kaczynska A, Brasch J, Palmer AG 3rd, Shapiro L, Honig B, Mann RS. Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites. Cell Rep 24:2221-2230 (2018). [Pubmed]

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