DNA Binding Motif

Accessions: 5vxn_D (3D-footprint 20231221)
Names: Transcriptional regulatory protein RcsB
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of two RcsB dimers bound to two parallel DNAs.
Length: 5
Consensus: tAaGA
Weblogo:
PSSM: P0 A C G T
01 16 13 13 54 t
02 96 0 0 0 A
03 54 13 16 13 a
04 0 0 96 0 G
05 96 0 0 0 A
Binding TFs: 5vxn_D (Response regulator receiver domain, Bacterial regulatory proteins, luxR family)
Binding Sites: 5vxn_G
5vxn_H
Publications: Filippova EV, Zemaitaitis B, Aung T, Wolfe AJ, Anderson WF. Structural Basis for DNA Recognition by the Two-Component Response Regulator RcsB. MBio : (2018). [Pubmed]

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