DNA Binding Motif

Accessions: 6cg0_CN (3D-footprint 20231221)
Names: High mobility group protein B1
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Cryo-EM structure of mouse RAG1/2 HFC complex (3.17 A)
Length: 29
Consensus: ACnnnnnnnnnnnncAAGTnnnnannnAG
Weblogo:
PSSM: P0 A C G T
01 96 0 0 0 A
02 0 96 0 0 C
03 24 24 24 24 n
04 24 24 24 24 n
05 24 24 24 24 n
06 24 24 24 24 n
07 24 24 24 24 n
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 24 24 24 24 n
12 24 24 24 24 n
13 24 24 24 24 n
14 24 24 24 24 n
15 12 60 12 12 c
16 84 0 12 0 A
17 96 0 0 0 A
18 0 0 96 0 G
19 0 0 0 96 T
20 24 24 24 24 n
21 24 24 24 24 n
22 24 24 24 24 n
23 24 24 24 24 n
24 60 12 12 12 a
25 24 24 24 24 n
26 24 24 24 24 n
27 24 24 24 24 n
28 96 0 0 0 A
29 0 0 96 0 G
Binding TFs: 6cg0_N (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: 6cg0_G
6cg0_M
Publications: Kim MS, Chuenchor W, Chen X, Cui Y, Zhang X, Zhou ZH, Gellert M, Yang W. Cracking the DNA Code for V(D)J Recombination. Mol Cell 70:358-370 (2018). [Pubmed]

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