DNA Binding Motif

						

			
Accessions: MA1268.1 (JASPAR 2024), M0267 (AthalianaCistrome v4_May2016)

			
Names: AT1G69570, CDF5, AT1G69570.DAP, T02984;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 27
Consensus: ttttyaCTTTTtyyTTTtttttttttw
Weblogo: 
PSSM: P0      A      C      G      T
01    131    120     57    288      t
02    138     85     62    311      t
03     91     51     82    372      t
04     75     42    113    366      t
05     68    263     22    243      y
06    348     72     81     95      a
07      0    596      0      0      C
08      0     24      0    572      T
09      0      4      0    592      T
10      0      0      0    596      T
11     89     21      8    478      T
12     80    103     60    353      t
13     98    250     59    189      y
14     80    151     30    335      y
15     65     80     21    430      T
16     66     62     25    443      T
17     84     60     34    418      T
18     97    109     36    354      t
19     78    142     60    316      t
20    114    110     51    321      t
21     73    100     68    355      t
22     80     82     56    378      t
23     99     76     52    369      t
24    121     99     59    317      t
25    114     89     81    312      t
26    134     98     73    291      t
27    153    122     48    273      w
Type: Heterodimer
Binding TFs: Q9SEZ3 / T02984 (Dof domain, zinc finger)
Q9SEZ3
Binding Sites: MA1268.1.1
MA1268.1.10 / MA1268.1.12
MA1268.1.11
MA1268.1.13
MA1268.1.14
MA1268.1.15
MA1268.1.16
MA1268.1.17
MA1268.1.18
MA1268.1.19
MA1268.1.2
MA1268.1.20
MA1268.1.3
MA1268.1.4
MA1268.1.5
MA1268.1.6
MA1268.1.7
MA1268.1.8
MA1268.1.9
			
Publications: Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.