DNA Binding Motif

						

			
Accessions: MA0114.2 (JASPAR 2024)

			
Names: HNF4A
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 15
Consensus: cTGrmCTTTGrmCyy
Weblogo: 
PSSM: P0      A      C      G      T
01   2766   5971   3974   4057      c
02   1731    720    907  13410      T
03    837     51  15810     70      G
04   6075   1846   8370    477      r
05  11026   4425    329    988      m
06    117  16535     67     49      C
07     26   1630      0  15112      T
08    178   2637    367  13586      T
09      0    173    407  16188      T
10    864     35  15741    128      G
11   5270   3745   5340   2413      r
12   6119   5653   1662   3334      m
13   1156  13491    352   1769      C
14   1870   6498    415   7985      y
15   2070   6450   3001   5247      y
Type: Heterodimer
Binding TFs: P41235 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
P41235
Binding Sites: MA0114.2.1
MA0114.2.10
MA0114.2.11
MA0114.2.12
MA0114.2.13
MA0114.2.14
MA0114.2.15
MA0114.2.16
MA0114.2.17
MA0114.2.18
MA0114.2.19
MA0114.2.2
MA0114.2.20
MA0114.2.3
MA0114.2.4
MA0114.2.5
MA0114.2.6
MA0114.2.7
MA0114.2.8
MA0114.2.9
			
Publications: Ellrott K, Yang C, Sladek F.M, Jiang T. Identifying transcription factor binding sites through Markov chain optimization. Bioinformatics (Oxford, England) 18 Suppl 2:S100-9 (2002). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.