DNA Binding Motif

Accessions: CN0016.1 (JASPAR 2018)
Names: LM16
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Length: 23
Consensus: CTTTGArmTcyTyrGATGAAAGr
Weblogo:
PSSM: P0 A C G T
01 34 478 20 120 C
02 27 86 7 532 T
03 18 82 8 544 T
04 23 13 53 563 T
05 58 31 548 15 G
06 574 11 44 23 A
07 174 19 420 39 r
08 347 188 64 53 m
09 21 21 34 576 T
10 19 431 40 162 c
11 33 418 11 190 y
12 54 97 40 461 T
13 37 265 62 288 y
14 379 5 227 41 r
15 50 24 573 5 G
16 567 26 41 18 A
17 96 11 67 478 T
18 100 12 518 22 G
19 607 12 26 7 A
20 624 9 17 2 A
21 617 2 19 14 A
22 115 5 512 20 G
23 169 66 378 39 r
Publications: Xie X, Mikkelsen T.S, Gnirke A, Lindblad-Toh K, Kellis M, Lander E.S. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America 104:7145-50 (2007). [Pubmed]

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