DNA Binding Motif

Accessions: UP00572A_1 (UniPROBE 20160601)
Names: ANAC092, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6, Arabidopsis NAC domain containing protein 92, ATNAC2, MIJ24_11, MIJ24.11, NAC-domain transcription factor, NAC6, ORE1, ORESARA 1
Organisms: Arabidopsis thaliana
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 13
Consensus: myACACGCAAycd
Weblogo:
PSSM: P0 A C G T
01 0.44 0.25 0.18 0.13 m
02 0.16 0.29 0.08 0.47 y
03 0.89 0.02 0.04 0.05 A
04 0 0.93 0.01 0.06 C
05 0.99 0 0 0 A
06 0.02 0.97 0 0 C
07 0 0 0.98 0.02 G
08 0.01 0.94 0.01 0.04 C
09 0.89 0.07 0.01 0.03 A
10 0.96 0 0 0.04 A
11 0.07 0.62 0.03 0.28 y
12 0.15 0.63 0.16 0.06 c
13 0.27 0.15 0.26 0.32 d
Binding TFs: UP00572A (No apical meristem (NAM) protein)
Binding Sites: CACGCCAC
TTACGCAA
ACACGCAA
ACACGCCA
ACACGCTA
ACACGGCA
ACACGTAA
ACACGTCA
ACACGTTA
ACGCAACC
ACGCAATC
ATACGCAA
ATTGCGTA
ATTGCGTG
CACGCAAA
CACGCAAC
GCACGCAA
GTACGCAA
GTTGCGTA
TCACGCAA
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

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