DNA Binding Motif

Accessions: UP00513A_1 (UniPROBE 20160601)
Names: A.cas Fox, ACA1_126960
Organisms: Acanthamoeba castellanii
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: kyywwwkTGYTGCAAtctwrwc
Weblogo:
PSSM: P0 A C G T
01 0.18 0.06 0.29 0.48 k
02 0.16 0.27 0.13 0.43 y
03 0.11 0.51 0.13 0.26 y
04 0.33 0.24 0.18 0.26 w
05 0.42 0.17 0.15 0.26 w
06 0.40 0.17 0.15 0.27 w
07 0.11 0.06 0.42 0.42 k
08 0.10 0.01 0.08 0.81 T
09 0.01 0 0.96 0.02 G
10 0.06 0.25 0 0.69 Y
11 0.02 0 0.01 0.97 T
12 0.02 0 0.97 0.01 G
13 0.01 0.92 0.05 0.01 C
14 0.83 0.01 0.06 0.11 A
15 0.70 0.10 0.05 0.15 A
16 0.11 0.21 0.09 0.58 t
17 0.17 0.47 0.12 0.24 c
18 0.14 0.11 0.10 0.66 t
19 0.29 0.17 0.14 0.40 w
20 0.40 0.07 0.30 0.23 r
21 0.35 0.23 0.17 0.26 w
22 0.18 0.55 0.03 0.24 c
Binding TFs: UP00513A (Fork head domain)
Binding Sites: ATGCAGCA
ATGCATCA
GATGCATC
GTGCTGCA
AAGTTGCA
ACGCAACA
ATGCAACA
ATGCTGCA
ATGTTGCG
ATTGCAGC
ATTGTTGC
CCGCTGCA
CGCAACAA
GCAACAAA
GTGCAACA
GTGTTGCA
GTTGCAAC
TGCAACAA
TGCTGCAA
TGTTGCAA
Publications: Nakagawa S, Gisselbrecht SS, Rogers JM, Hartl DL, Bulyk ML. DNA-binding specificity changes in the evolution of forkhead transcription factors. Proc Natl Acad Sci U S A 110:12349-54 (2013). [Pubmed]

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