DNA Binding Motif

						

			
Accessions: MA0551.1 (JASPAR 2024)

			
Names: HY5
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-chip
Length: 16
Consensus: wwtGmCACGTGkCaww
Weblogo: 
PSSM: P0      A      C      G      T
01    103     60     68     89      w
02    108     56     62     94      w
03     52     55     30    183      t
04      9      8    279     24      G
05    150    165      1      4      m
06      0    317      1      2      C
07    310      1      9      0      A
08      3    311      5      1      C
09      1      5    311      3      G
10      0      9      1    310      T
11      2      1    317      0      G
12      4      1    165    150      k
13     24    279      8      9      C
14    183     30     55     52      a
15     94     62     56    108      w
16     89     68     60    103      w
Type: Heterodimer
Binding TFs: O24646 (bZIP transcription factor, Basic region leucine zipper)
O24646
			
Publications: Song Y. H., Yoo C. M., Hong A. P., Kim S. H., Jeong H. J., Shin S. Y., Kim H. J., Yun D. J., Lim C. O., Bahk J. D., Lee S. Y., Nagao R. T., Key J. L., Hong J. C. DNA-binding study identifies C-box and hybrid C/G-box or C/A-box motifs as high-affinity binding sites for STF1 and LONG HYPOCOTYL5 proteins.. Plant Physiol. 146:1862-1877 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.