DNA Binding Motif

						

			
Accessions: 1bdt_ABCD (3D-footprint 20231221)

			
Names: PROTEIN (GENE-REGULATING PROTEIN ARC)
Organisms: Enterobacteria phage P22
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: WILD TYPE GENE-REGULATING PROTEIN ARC/DNA COMPLEX
Length: 19
Consensus: TTaTAGAannnnTCTACcA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0      0      0     96      T
03     54     18     11     13      a
04      0      0      0     96      T
05     96      0      0      0      A
06      0      0     96      0      G
07     96      0      0      0      A
08     64      4     13     15      a
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13      0      0      0     96      T
14      0     96      0      0      C
15      0      0      0     96      T
16     96      0      0      0      A
17      4     77      4     11      C
18     10     64      4     18      c
19     96      0      0      0      A
Type: Heterodimer
Binding TFs: 1bdt_A (Arc-like DNA binding domain)
1bdt_B (Arc-like DNA binding domain)
1bdt_C / 1bdt_D (Arc-like DNA binding domain)
Binding Sites: 1bdt_E
1bdt_F
			
Publications: Schildbach J.F, Karzai A.W, Raumann B.E, Sauer R.T. Origins of DNA-binding specificity: role of protein contacts with the DNA backbone. Proceedings of the National Academy of Sciences of the United States of America 96:811-7 (1999). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.