DNA Binding Motif

						

			
Accessions: MA0927.1 (JASPAR 2024)

			
Names: vab-7
Organisms: Caenorhabditis elegans
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 8
Consensus: cTAATTAa
Weblogo: 
PSSM: P0      A      C      G      T
01    212    600    153     35      c
02     18    117      0    865      T
03    787    165     32     16      A
04    992      8      0      0      A
05      0     24      8    969      T
06      8     24    136    832      T
07    894      0     97      9      A
08    613    227     53    107      a
Type: Heterodimer
Binding TFs: Q93899 (Homeobox domain)
Q93899
			
Publications: Noyes M.B, Christensen R.G, Wakabayashi A, Stormo G.D, Brodsky M.H, Wolfe S.A. Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell 133:1277-89 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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