DNA Binding Motif

						

			
Accessions: BARX1_DBD_1 (HumanTF 1.0)

			
Names: BARX1
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3
Length: 17
Consensus: cvATTAAawavCrATTA
Weblogo: 
PSSM: P0      A      C      G      T
01    420   1863    245    735      c
02    734    696    540    186      v
03   1696    305    235    134      A
04      7      9      4   2200      T
05      7     66      6   2166      T
06   1841      8     16     71      A
07   1720    115    148    416      A
08   1668    194    165    572      a
09    885     67    102   1033      w
10   1662    189    297    454      a
11    587    619    559    395      v
12    290   2124    259    293      C
13    628    520   1026     74      r
14   1716    396    191    213      A
15      4      4      0   2101      T
16     24     74      5   2097      T
17   1860     13     36    157      A
Binding TFs: BARX1_DBD (Homeobox domain)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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