DNA Binding Motif

						

			
Accessions: sd (DrosophilaTF 1.1)

			
Names: sd
Organisms: Drosophila melanogaster
Libraries: DrosophilaTF 1.1 1
1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed]
Length: 9
Consensus: wrnATkTnT
Weblogo: 
PSSM: P0      A      C      G      T
01    0.5      0      0    0.5      w
02    0.5      0    0.5      0      r
03   0.25   0.25   0.25   0.25      n
04      1      0      0      0      A
05      0      0      0      1      T
06      0      0    0.5    0.5      k
07      0      0      0      1      T
08   0.25   0.25   0.25   0.25      n
09      0      0      0      1      T
Binding TFs: sd (TEA/ATTS domain family)
			
Publications: Lunde Karen, Trimble Jennifer L., Guichard Annabel, Guss Kirsten A., Nauber Ulrich, Bier Ethan. Activation of the knirps locus links patterning to morphogenesis of the second wing vein in Drosophila.. Development 130:235-248 (2003). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.