DNA Binding Motif

Accessions: 7ce1_CD (3D-footprint 20231221)
Names: LacI-type transcription factor
Organisms: Agrobacterium tumefaciens A6
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Complex STRUCTURE OF TRANSCRIPTION FACTOR SghR with its COGNATE DNA
Length: 14
Consensus: CTGCAACGTTGCAG
Weblogo:
PSSM: P0 A C G T
01 9 73 7 7 C
02 0 0 0 96 T
03 0 0 96 0 G
04 7 75 7 7 C
05 96 0 0 0 A
06 96 0 0 0 A
07 0 96 0 0 C
08 0 0 96 0 G
09 0 0 0 96 T
10 0 0 0 96 T
11 7 7 73 9 G
12 0 96 0 0 C
13 96 0 0 0 A
14 9 7 73 7 G
Type: Heterodimer
Binding TFs: 7ce1_C (Bacterial regulatory proteins, lacI family, Periplasmic binding proteins and sugar binding domain of LacI family, Periplasmic binding protein-like domain)
7ce1_D (Bacterial regulatory proteins, lacI family, Periplasmic binding proteins and sugar binding domain of LacI family, Periplasmic binding protein-like domain)
Binding Sites: 7ce1_c / 7ce1_d
Publications: Ye F, Wang C, Fu Q, Yan XF, Bharath SR, Casanas A, Wang M, Song H, Zhang LH, Gao YG. Structural basis of a novel repressor, SghR, controlling Agrobacterium infection by cross-talking to plants. J Biol Chem 295:12290-12304 (2020). [Pubmed]

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