DNA Binding Motif

						

			
Accessions: CaiF (RegulonDB 7.5)

			
Names: CaiF
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 15
Consensus: AmCAATATTGAAArY
Weblogo: 
PSSM: P0      A      C      G      T
01      4      0      0      0      A
02      2      2      0      0      m
03      0      4      0      0      C
04      4      0      0      0      A
05      4      0      0      0      A
06      0      0      0      4      T
07      4      0      0      0      A
08      0      0      0      4      T
09      0      0      0      4      T
10      0      0      4      0      G
11      4      0      0      0      A
12      4      0      0      0      A
13      4      0      0      0      A
14      2      0      2      0      r
15      0      1      0      3      Y
Binding TFs: ECK120007182 (Protein of unknown function (DUF1401))
Binding Sites: ECK120013811
ECK120013813
ECK125109819
ECK125109820
			
	
			


			

				

				
				
				
				

			

			

		

	
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