DNA Binding Motif

						

			
Accessions: CN0034.1 (JASPAR 2024)

			
Names: LM34
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 19
Consensus: tsATTTGCATTkCAAATga
Weblogo: 
PSSM: P0      A      C      G      T
01     55     15     52    194      t
02     43     97    131     45      s
03    271     28      6     11      A
04      7      2      1    306      T
05      0      7      2    307      T
06     10      0      2    304      T
07     27     18    251     20      G
08     39    264      2     11      C
09    286     10      0     20      A
10     22     10      4    280      T
11      9      0     20    287      T
12     30     30    162     94      k
13     11    255     20     30      C
14    304      4      2      6      A
15    289      1     24      2      A
16    312      0      1      3      A
17     37      7     10    262      T
18     48     16    208     44      g
19    146     64     52     54      a
			
Publications: Xie X, Mikkelsen T.S, Gnirke A, Lindblad-Toh K, Kellis M, Lander E.S. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America 104:7145-50 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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