DNA Binding Motif

Accessions: 1cdw_A (3D-footprint 20210203)
Names: PROTEIN (TATA BINDING PROTEIN (TBP))
Organisms: Homo sapiens
Libraries: 3D-footprint 20210203 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: HUMAN TBP CORE DOMAIN COMPLEXED WITH DNA
Length: 8
Consensus: TATAAaAg
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 96 0 0 0 A
03 0 0 0 96 T
04 96 0 0 0 A
05 96 0 0 0 A
06 54 16 13 13 a
07 96 0 0 0 A
08 13 13 54 16 g
Binding TFs: 1cdw_A (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 1cdw_B
1cdw_C
Publications: Nikolov D.B, Chen H, Halay E.D, Hoffman A, Roeder R.G, Burley S.K. Crystal structure of a human TATA box-binding protein/TATA element complex. Proceedings of the National Academy of Sciences of the United States of America 93:4862-7 (1996). [Pubmed]

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