DNA Binding Motif

Accessions: 1gxp_EF (3D-footprint 20231221)
Names: PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: PhoB effector domain in complex with pho box DNA.
Length: 18
Consensus: CnnGACAnCTTTnTGACA
Weblogo:
PSSM: P0 A C G T
01 8 72 8 8 C
02 24 24 24 24 n
03 24 24 24 24 n
04 0 0 96 0 G
05 96 0 0 0 A
06 0 96 0 0 C
07 96 0 0 0 A
08 24 24 24 24 n
09 8 68 8 12 C
10 4 4 4 84 T
11 4 0 4 88 T
12 0 0 0 96 T
13 24 24 24 24 n
14 4 4 0 88 T
15 8 8 72 8 G
16 96 0 0 0 A
17 0 96 0 0 C
18 84 4 4 4 A
Binding TFs: 1gxp_E / 1gxp_F (Transcriptional regulatory protein, C terminal)
Binding Sites: 1gxp_G
1gxp_H
Publications: Blanco AG., Sola M., Gomis-Ruth FX., Coll M. Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator. Structure. 10(5):701-13 (2002). [Pubmed]

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