DNA Binding Motif

Accessions: MA0570.1 (JASPAR 2018)
Names: ABF1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1
1 [Pubmed]
Notes: SELEX
Length: 19
Consensus: GgmCACGTGGCmcrvvvgr
Weblogo:
PSSM: P0 A C G T
01 0 4 32 8 G
02 8 2 28 6 g
03 19 16 0 9 m
04 0 35 8 1 C
05 43 0 1 0 A
06 0 44 0 0 C
07 0 0 44 0 G
08 0 0 0 44 T
09 0 0 44 0 G
10 0 0 38 6 G
11 0 44 0 0 C
12 17 14 9 4 m
13 6 24 9 5 c
14 13 6 21 4 r
15 20 11 11 2 v
16 12 19 13 0 v
17 13 12 17 2 v
18 10 6 23 5 g
19 13 9 20 2 r
Binding TFs: Q9M7Q5 (Basic region leucine zipper, bZIP transcription factor)
Publications: Choi H., Hong J., Ha J., Kang J., Kim S. Y. ABFs, a family of ABA-responsive element binding factors. J. Biol. Chem. 275:1723-1730 (2000). [Pubmed]

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