DNA Binding Motif

Accessions: 4cn5_A (3D-footprint 20231221)
Names: RETINOIC ACID RECEPTOR RXR-ALPHA
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of the Human Retinoid X Receptor DNA-Binding Domain Bound to the Human Nr1d1 Response Element
Length: 8
Consensus: GGTCAnnG
Weblogo:
PSSM: P0 A C G T
01 0 0 96 0 G
02 0 0 96 0 G
03 9 9 11 67 T
04 0 96 0 0 C
05 67 11 9 9 A
06 24 24 24 24 n
07 24 24 24 24 n
08 9 9 67 11 G
Binding TFs: 4cn5_A (Zinc finger, C4 type (two domains))
Binding Sites: 4cn5_C
4cn5_D
Publications: Osz J, McEwen A.G, Poussin-Courmontagne P, Moutier E, Birck C, Davidson I, Moras D, Rochel N. Structural basis of natural promoter recognition by the retinoid X nuclear receptor. Scientific reports 5:8216 (2015). [Pubmed]

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