DNA Binding Motif

Accessions: MA0580.1 (JASPAR 2024)
Names: DYT1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 14
Consensus: mrtgArwCACGTGA
Weblogo:
PSSM: P0 A C G T
01 4 6 0 1 m
02 3 1 7 0 r
03 1 2 1 7 t
04 2 2 6 1 g
05 10 1 0 0 A
06 3 0 7 1 r
07 4 0 0 7 w
08 0 11 0 0 C
09 11 0 0 0 A
10 0 11 0 0 C
11 1 0 10 0 G
12 0 0 0 11 T
13 0 0 11 0 G
14 11 0 0 0 A
Type: Heterodimer
Binding TFs: O81900 (Helix-loop-helix DNA-binding domain)
O81900
Publications: Feng B, Lu D, Ma X, Peng Y, Sun Y, Ning G, Ma H. Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development. The Plant journal : for cell and molecular biology 72:612-24 (2012). [Pubmed]

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