DNA Binding Motif

						

			
Accessions: MA0273.1 (JASPAR 2024)

			
Names: ARO80
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 21
Consensus: grkmawkCTCGGbwAkwawkh
Weblogo: 
PSSM: P0      A      C      G      T
01    102    155    531    210      g
02    330    193    301    174      r
03    126    232    317    323      k
04    407    253    203    136      m
05    390    193    229    186      a
06    310    198    135    355      w
07     83    154    336    426      k
08     40    744     30    185      C
09      5    231      8    753      T
10      5    987      1      5      C
11      1     22    975      1      G
12      1      5    990      2      G
13     15    359    295    329      b
14    670      4      6    318      w
15    690     68     60    181      A
16    105    222    372    299      k
17    269    119    193    418      w
18    353    210    205    230      a
19    257    217    178    347      w
20    236    103    349    310      k
21    278    252    170    298      h
Type: Heterodimer
Binding TFs: Q04052 (Fungal Zn(2)-Cys(6) binuclear cluster domain)
Q04052
			
Publications: Newburger D.E, Bulyk M.L. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37:D77-82 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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