DNA Binding Motif

						

			
Accessions: MA1026.2 (JASPAR 2024), M0419 (AthalianaCistrome v4_May2016)

			
Names: ATHB-15, ATHB15, ATHB15.DAP, T06272;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: rawwrTAATGATkAy
Weblogo: 
PSSM: P0      A      C      G      T
01    265     43    158    124      r
02    363     31     84    112      a
03    268     35     60    227      w
04    212     63    131    184      w
05    199     46    329     16      r
06     13     97      0    480      T
07    518      1     68      3      A
08    590      0      0      0      A
09      0      0      0    590      T
10     27     82    462     19      G
11    590      0      0      0      A
12      0      0      0    590      T
13     10      0    218    362      k
14    494      1     87      8      A
15     97    248     63    182      y
Type: Heterodimer
Binding TFs: T06272 (Homeobox domain, START domain, MEKHLA domain)
Q9ZU11 (Homeobox domain, START domain, MEKHLA domain)
Q9ZU11
Binding Sites: MA1026.2.3
MA1026.2.15
MA1026.2.18
MA1026.2.19
MA1026.2.6
MA1026.2.5
MA1026.2.7
MA1026.2.8
MA1026.2.9
MA1026.2.14
MA1026.2.11 / MA1026.2.12
MA1026.2.10
MA1026.2.1
MA1026.2.13
MA1026.2.16
MA1026.2.17
MA1026.2.2
MA1026.2.20
MA1026.2.4
			
Publications: Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.