DNA Binding Motif
| Accessions: | MA1257.1 (JASPAR 2024), M0098 (AthalianaCistrome v4_May2016) |
| Names: | ERF9, ERF9.DAP, T23981; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 21 |
| Consensus: | yggcggmkryGrCGGCGGmGr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 90 246 79 140 y 02 89 24 353 89 g 03 109 50 336 60 g 04 106 265 69 115 c 05 83 32 343 97 g 06 106 63 333 53 g 07 143 239 39 134 m 08 104 32 269 150 k 09 161 37 270 87 r 10 111 167 17 260 y 11 73 6 383 93 G 12 167 15 360 13 r 13 26 496 0 33 C 14 0 0 551 4 G 15 10 0 544 1 G 16 16 493 0 46 C 17 4 0 514 37 G 18 31 34 483 7 G 19 204 253 6 92 m 20 52 8 439 56 G 21 161 71 264 59 r |
| Type: | Heterodimer |
| Binding TFs: | Q9FE67 / T23981 (AP2 domain) Q9FE67 |
| Publications: | Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.