DNA Binding Motif

Accessions: 1hjc_D (3D-footprint 20231221)
Names: RUNT-RELATED TRANSCRIPTION FACTOR 1
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
Length: 8
Consensus: CaaCCACA
Weblogo:
PSSM: P0 A C G T
01 0 84 0 12 C
02 64 12 12 8 a
03 51 12 19 14 a
04 0 96 0 0 C
05 0 96 0 0 C
06 96 0 0 0 A
07 0 96 0 0 C
08 76 6 8 6 A
Binding TFs: 1hjc_D (Runt domain)
Binding Sites: 1hjc_E
1hjc_F
Publications: Tahirov T.H, Inoue-Bungo T, Morii H, Fujikawa A, Sasaki M, Kimura K, Shiina M, Sato K, Kumasaka T, Yamamoto M, Ishii S, Ogata K. Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta. Cell 104:755-67 (2001). [Pubmed]

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