DNA Binding Motif

						

			
Accessions: opa_NAR_FBgn0003002 (FlyZincFinger 1.0 ), MA0456.1 (JASPAR 2024)

			
Names: CG1133, opa
Organisms: Drosophila melanogaster
Libraries: FlyZincFinger 1.0  1, JASPAR 2024 2
1 Enuameh MS et al (2013) Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants. Genome Res. 23(6):928-40. doi: 10.1101/gr.151472.112 [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: bacterial 1-hybrid
Length: 12
Consensus: GmCCCCCCGCtG
Weblogo: 
PSSM: P0      A      C      G      T
01      0      1     15      2      G
02     10      7      1      0      m
03      1     16      0      1      C
04      1     15      1      1      C
05      0     16      1      1      C
06      0     18      0      0      C
07      0     18      0      0      C
08      0     14      0      4      C
09      4      0     13      1      G
10      0     14      2      2      C
11      3      1      4     10      t
12      2      0     16      0      G
Type: Heterodimer
Binding TFs: opa (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
P39768 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
P39768
Binding Sites: MA0456.1.1
MA0456.1.10
MA0456.1.11
MA0456.1.12
MA0456.1.13
MA0456.1.14
MA0456.1.15
MA0456.1.16
MA0456.1.17
MA0456.1.18
MA0456.1.19
MA0456.1.2
MA0456.1.20
MA0456.1.3
MA0456.1.4
MA0456.1.5
MA0456.1.6
MA0456.1.7
MA0456.1.8
MA0456.1.9
			
Publications: Enuameh MS et al (2013) Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants. Genome Res. 23(6):928-40. doi: 10.1101/gr.151472.112 [Pubmed]


Noyes M.B, Meng X, Wakabayashi A, Sinha S, Brodsky M.H, Wolfe S.A. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system. Nucleic acids research 36:2547-60 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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