DNA Binding Motif

Accessions: 3pvv_B (3D-footprint 20231221)
Names: Chromosomal replication initiator protein dnaA
Organisms: Mycobacterium tuberculosis, strain ATCC 25177 / H37Ra
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNA
Length: 9
Consensus: wTGknCmCA
Weblogo:
PSSM: P0 A C G T
01 25 1 5 65 w
02 0 0 0 96 T
03 0 0 90 6 G
04 16 20 25 35 k
05 24 24 24 24 n
06 0 96 0 0 C
07 65 25 0 6 m
08 0 96 0 0 C
09 96 0 0 0 A
Binding TFs: 3pvv_B (Bacterial dnaA protein helix-turn-helix)
Binding Sites: 3pvv_E
3pvv_F
Publications: Tsodikov O.V, Biswas T. Structural and thermodynamic signatures of DNA recognition by Mycobacterium tuberculosis DnaA. Journal of molecular biology 410:461-76 (2011). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.