DNA Binding Motif

						

			
Accessions: RocR (DBTBS 1.0)

			
Names: RocR
Organisms: Bacillus subtilis
Libraries: DBTBS 1.0 1
1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed]
Length: 15
Consensus: GCAAAAkmATTyTGC
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      1      0      G
02      0      1      0      0      C
03      1      0      0      0      A
04      1      0      0      0      A
05      1      0      0      0      A
06      1      0      0      0      A
07   0.19      0   0.37   0.43      k
08   0.63   0.37      0      0      m
09      1      0      0      0      A
10   0.23      0      0   0.77      T
11      0      0      0      1      T
12      0   0.37      0   0.63      y
13      0      0      0      1      T
14      0      0      1      0      G
15   0.15   0.85      0      0      C
Binding TFs: RocR (Sigma-54 interaction domain, Bacterial regulatory protein, Fis family, AAA domain (dynein-related subfamily), PAS fold, PAS domain)
Binding Sites: rocA_2 / rocG_1
rocA_3 / rocG_2
rocD_2
rocD_3
rocR_1
			
Publications: Ali N.O, Jeusset J, Larquet E, Le Cam E, Belitsky B, Sonenshein A.L, Msadek T, Débarbouillé M. Specificity of the interaction of RocR with the rocG-rocA intergenic region in Bacillus subtilis. Microbiology (Reading, England) 149:739-50 (2003). [Pubmed]


Calogero S, Gardan R, Glaser P, Schweizer J, Rapoport G, Debarbouille M. RocR, a novel regulatory protein controlling arginine utilization in Bacillus subtilis, belongs to the NtrC/NifA family of transcriptional activators. Journal of bacteriology 176:1234-41 (1994). [Pubmed]


Gardan R, Rapoport G, Débarbouillé M. Expression of the rocDEF operon involved in arginine catabolism in Bacillus subtilis. Journal of molecular biology 249:843-56 (1995). [Pubmed]


Belitsky B.R, Sonenshein A.L. An enhancer element located downstream of the major glutamate dehydrogenase gene of Bacillus subtilis. Proceedings of the National Academy of Sciences of the United States of America 96:10290-5 (1999). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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