DNA Binding Motif

Accessions: 4roc_AB (3D-footprint 20210203)
Names: TATA-box-binding protein
Organisms: Homo sapiens
Libraries: 3D-footprint 20210203 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Human TFIIB-related factor 2 (Brf2) and TBP bound to U6#2 promoter
Length: 15
Consensus: GGnnTTAAAATAnGT
Weblogo:
PSSM: P0 A C G T
01 0 0 96 0 G
02 5 1 90 0 G
03 24 24 24 24 n
04 24 24 24 24 n
05 1 5 0 90 T
06 0 0 0 96 T
07 96 0 0 0 A
08 96 0 0 0 A
09 96 0 0 0 A
10 79 7 5 5 A
11 0 0 0 96 T
12 79 5 5 7 A
13 24 24 24 24 n
14 11 13 67 5 G
15 5 11 5 75 T
Binding TFs: 4roc_B (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 4roc_N
4roc_T
Publications: Gouge J, Satia K, Guthertz N, Widya M, Thompson AJ, Cousin P, Dergai O, Hernandez N, Vannini A. Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2. Cell 163:1375-87 (2015). [Pubmed]

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