DNA Binding Motif

Accessions: M0366 (AthalianaCistrome v4_May2016)
Names: DEL2.ampDAP, T25720;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 15
Consensus: tTTTTGGCGGGAAAA
Weblogo:
PSSM: P0 A C G T
01 114 5 135 295 t
02 57 1 7 484 T
03 26 2 1 520 T
04 20 0 4 525 T
05 8 1 3 537 T
06 3 2 543 1 G
07 0 0 549 0 G
08 1 548 0 0 C
09 1 0 547 1 G
10 1 8 540 0 G
11 0 6 542 1 G
12 545 0 4 0 A
13 549 0 0 0 A
14 526 7 6 10 A
15 425 28 12 84 A
Binding TFs: T25720 (E2F/DP family winged-helix DNA-binding domain)
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

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