DNA Binding Motif

						

			
Accessions: 1cqt_BJ (3D-footprint 20231221)

			
Names: POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENT
Length: 10
Consensus: TATTTGCATA
Weblogo: 
PSSM: P0      A      C      G      T
01     11      9      9     67      T
02     96      0      0      0      A
03      0      0      0     96      T
04      0      0      0     96      T
05      0      0      0     96      T
06      0      0     96      0      G
07      9     67     11      9      C
08     69      9      9      9      A
09      0      0      0     96      T
10     96      0      0      0      A
Binding TFs: 1cqt_B (Homeobox domain, Pou domain - N-terminal to homeobox domain)
Binding Sites: 1cqt_O
1cqt_P
			
Publications: Chasman D, Cepek K, Sharp P.A, Pabo C.O. Crystal structure of an OCA-B peptide bound to an Oct-1 POU domain/octamer DNA complex: specific recognition of a protein-DNA interface. Genes & development 13:2650-7 (1999). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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