DNA Binding Motif

						

			
Accessions: MA1157.1 (JASPAR 2024), M0329 (AthalianaCistrome v4_May2016)

			
Names: NUC, NUC.DAP, T24145;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 20
Consensus: ttwwtTTTTGTCgTtTwsyk
Weblogo: 
PSSM: P0      A      C      G      T
01    139    103     87    241      t
02    141    104     90    235      t
03    151    109     83    227      w
04    170     77     84    239      w
05    127     76     85    282      t
06     70     47     42    411      T
07      8     33     19    510      T
08      0      5      8    557      T
09      0      8      0    562      T
10      0      0    570      0      G
11      0      0      5    565      T
12      0    570      0      0      C
13     18     51    381    120      g
14      3     19     33    515      T
15     63     89     46    372      t
16     74      0      3    493      T
17    148     41     15    366      w
18     56    183    202    129      s
19     24    148     55    343      y
20    131     54    227    158      k
Type: Heterodimer
Binding TFs: Q9FFH3 / T24145
Q9FFH3
			
Publications: Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.