DNA Binding Motif
| Accessions: | bcd (DrosophilaTF 1.1) |
| Names: | bcd |
| Organisms: | Drosophila melanogaster |
| Libraries: | DrosophilaTF 1.1 1 1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed] |
| Length: | 11 |
| Consensus: | ssvcTAATCCb |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.2083 0.4583 0.2917 0.0417 s 02 0.2083 0.4167 0.2917 0.0833 s 03 0.25 0.3333 0.2917 0.125 v 04 0.0833 0.5417 0.2083 0.1667 c 05 0.0417 0.0833 0 0.875 T 06 1 0 0 0 A 07 1 0 0 0 A 08 0.0833 0 0.125 0.7917 T 09 0.0417 0.8333 0.0417 0.0833 C 10 0.0417 0.8333 0.0417 0.0833 C 11 0.2083 0.2917 0.25 0.25 b |
| Binding TFs: | bcd (Homeobox domain) |
| Binding Sites: | bcd_S26-17a bcd_S26-17b bcd_S28-1 bcd_S28-1" bcd_S28-1' bcd_S28-10 bcd_S28-10' bcd_S28-11' bcd_S28-11a bcd_S28-11b bcd_S28-12a bcd_S28-12b bcd_S28-13 bcd_S28-14' bcd_S28-14a bcd_S28-14b bcd_S28-15a bcd_S28-15b bcd_S28-16 bcd_S28-16' bcd_S28-18' bcd_S28-19 bcd_S28-2 bcd_S28-20a bcd_S28-20b bcd_S28-3 bcd_S28-4 bcd_S28-4' bcd_S28-5' bcd_S28-5a bcd_S28-5b bcd_S28-6 bcd_S28-7 bcd_S28-7' bcd_S28-9 |
| Publications: | Wilson D.S, Sheng G, Jun S, Desplan C. Conservation and diversification in homeodomain-DNA interactions: a comparative genetic analysis. Proceedings of the National Academy of Sciences of the United States of America 93:6886-91 (1996). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.