DNA Binding Motif

Accessions: 6cro_A (3D-footprint 20231221)
Names: LAMBDA CRO REPRESSOR
Organisms: Enterobacteria phage lambda, Escherichia phage lambda
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF LAMBDA-CRO BOUND TO A CONSENSUS OPERATOR AT 3.0 ANGSTROM RESOLUTION
Length: 17
Consensus: TATCACCnnnGGTGATA
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 96 0 0 0 A
03 9 7 7 73 T
04 0 96 0 0 C
05 73 7 9 7 A
06 0 96 0 0 C
07 0 96 0 0 C
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 0 0 96 0 G
12 0 0 96 0 G
13 7 7 7 75 T
14 0 0 96 0 G
15 73 9 7 7 A
16 0 0 0 96 T
17 96 0 0 0 A
Binding TFs: 6cro_A (Cro)
Binding Sites: 6cro_R
6cro_U
Publications: Albright R.A, Matthews B.W. Crystal structure of lambda-Cro bound to a consensus operator at 3.0 A resolution. Journal of molecular biology 280:137-51 (1998). [Pubmed]

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