DNA Binding Motif

						

			
Accessions: MA1417.1 (JASPAR 2024)

			
Names: O2
Organisms: Zea mays
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 13
Consensus: gtGCCAYGTCAtC
Weblogo: 
PSSM: P0      A      C      G      T
01    306    374   1046    312      g
02    129    391    151   1367      t
03     29      9   1895    105      G
04     56   1959     12     11      C
05      3   2016     17      2      C
06   2021      3     12      2      A
07     18   1485      7    528      Y
08    354    103   1571     10      G
09      4     13      2   2019      T
10     19   1991     28      0      C
11   1961     11     62      4      A
12     37    282    412   1307      t
13    124   1672     97    145      C
Type: Heterodimer
Binding TFs: P12959 (bZIP transcription factor, Basic region leucine zipper, Basic leucine-zipper C terminal)
P12959
			
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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