DNA Binding Motif

Accessions: 1r8d_AB (3D-footprint 20231221)
Names: transcription activator MtaN
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of MtaN Bound to DNA
Length: 19
Consensus: CnnnnACGTnGCGTnannG
Weblogo:
PSSM: P0 A C G T
01 11 69 8 8 C
02 24 24 24 24 n
03 24 24 24 24 n
04 24 24 24 24 n
05 24 24 24 24 n
06 96 0 0 0 A
07 0 96 0 0 C
08 0 0 96 0 G
09 8 8 11 69 T
10 24 24 24 24 n
11 8 8 72 8 G
12 0 96 0 0 C
13 0 0 96 0 G
14 0 0 0 96 T
15 24 24 24 24 n
16 56 13 14 13 a
17 24 24 24 24 n
18 24 24 24 24 n
19 4 4 82 6 G
Type: Heterodimer
Binding TFs: 1r8d_A (MerR family regulatory protein, MerR, DNA binding, MerR HTH family regulatory protein)
1r8d_B (MerR family regulatory protein, MerR, DNA binding, MerR HTH family regulatory protein)
Binding Sites: 1r8d_C
1r8d_D
Publications: Newberry K.J, Brennan R.G. The structural mechanism for transcription activation by MerR family member multidrug transporter activation, N terminus. The Journal of biological chemistry 279:20356-62 (2004). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.