DNA Binding Motif

						

			
Accessions: CTCF (SMILE-seq 1.0)

			
Names: CTCF
Organisms: Homo sapiens
Libraries: SMILE-seq 1.0 1
1 Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. SMiLE-seq identifies binding motifs of single and dimeric transcription factors. Nat Methods 14:316-322 (2017). [Pubmed]
Length: 17
Consensus: waGGgGGcGstrkwgsg
Weblogo: 
PSSM: P0      A      C      G      T
01  0.312   0.21  0.106  0.372      w
02  0.628   0.04  0.154  0.179      a
03  0.063   0.07  0.779  0.088      G
04  0.136  0.019  0.803  0.043      G
05  0.057  0.154  0.665  0.124      g
06  0.015   0.04  0.927  0.018      G
07  0.034  0.109  0.803  0.054      G
08  0.143  0.643  0.134  0.081      c
09  0.151  0.053  0.771  0.025      G
10   0.08  0.507  0.251  0.162      s
11  0.175  0.179  0.181  0.465      t
12  0.348  0.196  0.339  0.118      r
13  0.143  0.099  0.363  0.395      k
14  0.276  0.204  0.203  0.316      w
15  0.189  0.215  0.421  0.175      g
16  0.184  0.264  0.406  0.145      s
17  0.239  0.159  0.448  0.154      g
Binding TFs: CTCF (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
			
Publications: Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. SMiLE-seq identifies binding motifs of single and dimeric transcription factors. Nat Methods 14:316-322 (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.