DNA Binding Motif
| Accessions: | 3zkc_AB (3D-footprint 20231221) |
| Names: | HTH-TYPE TRANSCRIPTIONAL REGULATOR SINR |
| Organisms: | Bacillus subtilis, strain 168 |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Crystal structure of the master regulator for biofilm formation SinR in complex with DNA. |
| Length: | 15 |
| Consensus: | GTTCtnnnnGnGAaC |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0 0 96 0 G 02 0 0 0 96 T 03 0 0 0 96 T 04 0 96 0 0 C 05 10 16 17 53 t 06 24 24 24 24 n 07 24 24 24 24 n 08 24 24 24 24 n 09 24 24 24 24 n 10 1 10 69 16 G 11 24 24 24 24 n 12 0 0 96 0 G 13 86 10 0 0 A 14 64 10 10 12 a 15 16 75 0 5 C |
| Type: | Heterodimer |
| Binding TFs: | 3zkc_A (Helix-turn-helix, Helix-turn-helix domain, Cro/C1-type HTH DNA-binding domain, Helix-turn-helix domain) 3zkc_B (Helix-turn-helix, Helix-turn-helix domain, Cro/C1-type HTH DNA-binding domain, Helix-turn-helix domain) |
| Binding Sites: | 3zkc_C 3zkc_D |
| Publications: | Newman J.A, Rodrigues C, Lewis R.J. Molecular basis of the activity of SinR protein, the master regulator of biofilm formation in Bacillus subtilis. The Journal of biological chemistry 288:10766-78 (2013). [Pubmed] |
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