DNA Binding Motif

						

			
Accessions: HrcA (DBTBS 1.0)

			
Names: HrcA
Organisms: Bacillus subtilis
Libraries: DBTBS 1.0 1
1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed]
Length: 27
Consensus: ttaGCaCtCkytwrtkswGaGtGCtaa
Weblogo: 
PSSM: P0      A      C      G      T
01  -0.88  -0.88  -0.88   0.81      t
02  -0.88  -0.88  -0.88   0.81      t
03   0.81  -0.88  -0.88  -0.88      a
04  -0.88  -0.88   1.29  -0.88      G
05  -0.88   1.29  -0.88  -0.88      C
06   0.81  -0.88  -0.88  -0.88      a
07  -0.88   1.29  -0.88  -0.88      C
08  -0.88  -0.88  -0.88   0.81      t
09  -0.88   1.29  -0.88  -0.88      C
10  -0.88  -0.88   0.71   0.29      k
11  -0.88   0.71  -0.88   0.29      y
12  -0.88  -0.88  -0.88   0.81      t
13   0.29  -0.88  -0.88   0.29      w
14   0.29  -0.88   0.71  -0.88      r
15  -0.88  -0.88  -0.88   0.81      t
16  -0.88  -0.88   0.71   0.29      k
17  -0.88   0.71   0.71  -0.88      s
18   0.29  -0.88  -0.88   0.29      w
19  -0.88  -0.88   1.29  -0.88      G
20   0.81  -0.88  -0.88  -0.88      a
21  -0.88  -0.88   1.29  -0.88      G
22  -0.88  -0.88  -0.88   0.81      t
23  -0.88  -0.88   1.29  -0.88      G
24  -0.88   1.29  -0.88  -0.88      C
25  -0.88  -0.88  -0.88   0.81      t
26   0.81  -0.88  -0.88  -0.88      a
Binding TFs: HrcA (HrcA protein C terminal domain)
Binding Sites: groES_1
hrcA_1
			
Publications: Völker U, Engelmann S, Maul B, Riethdorf S, Völker A, Schmid R, Mach H, Hecker M. Analysis of the induction of general stress proteins of Bacillus subtilis. Microbiology (Reading, England) 140 ( Pt 4):741-52 (1994). [Pubmed]


Hecker M, Schumann W, Völker U. Heat-shock and general stress response in Bacillus subtilis. Molecular microbiology 19:417-28 (1996). [Pubmed]


Zuber U, Schumann W. CIRCE, a novel heat shock element involved in regulation of heat shock operon dnaK of Bacillus subtilis. Journal of bacteriology 176:1359-63 (1994). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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