DNA Binding Motif

						

			
Accessions: PF0027.1 (JASPAR 2024)

			
Names: TGGNNNNNNKCCAR
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: phylogenetic
Length: 14
Consensus: TGGmysssrkCCAR
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0   1640      T
02      0      0   1640      0      G
03      0      0   1640      0      G
04    437    679    353    171      m
05    351    465    388    436      y
06    387    451    455    347      s
07    298    526    547    269      s
08    381    419    488    352      s
09    441    330    498    371      r
10      0      0    971    669      k
11      0   1640      0      0      C
12      0   1640      0      0      C
13   1640      0      0      0      A
14    469      0   1171      0      R
Binding Sites: PF0027.1.1
PF0027.1.10
PF0027.1.11
PF0027.1.12
PF0027.1.13
PF0027.1.14
PF0027.1.15
PF0027.1.16
PF0027.1.17 / PF0027.1.19
PF0027.1.18 / PF0027.1.20
PF0027.1.2
PF0027.1.3
PF0027.1.4
PF0027.1.5
PF0027.1.6
PF0027.1.7
PF0027.1.8
PF0027.1.9
			
Publications: Xie X, Lu J, Kulbokas E.J, Golub T.R, Mootha V, Lindblad-Toh K, Lander E.S, Kellis M. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434:338-45 (2005). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.