DNA Binding Motif

Accessions: M0391_1.02 (CISBP 1.02)
Names: Bcl6b, T049021_1.02
Organisms: Mus musculus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Length: 12
Consensus: tyctrGRAarrm
Weblogo:
PSSM: P0 A C G T
01 0.2255 0.2255 0.2255 0.3236 t
02 0.1747 0.2642 0.1747 0.3864 y
03 0.1747 0.4760 0.1747 0.1747 c
04 0.2316 0.0461 0.1366 0.5857 t
05 0.6138 0.1121 0.2739 0.0002 r
06 0.1860 0.0002 0.8136 0.0002 G
07 0.7026 0.0002 0.2970 0.0002 R
08 0.7949 0.0002 0.2047 0.0002 A
09 0.6308 0.1173 0.2272 0.0247 a
10 0.3732 0.0755 0.4758 0.0755 r
11 0.5903 0.0755 0.2587 0.0755 r
12 0.2947 0.2970 0.2041 0.2041 m
Binding TFs: T049021_1.02 (Zinc finger, C2H2 type, BTB/POZ domain, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

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