DNA Binding Motif

						

			
Accessions: BATF3_DBD (HumanTF 1.0), MA0835.1 (JASPAR 2024)

			
Names: BATF3
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1, JASPAR 2024 2
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4, HT-SELEX
Length: 14
Consensus: TGATGACGTCATCr
Weblogo: 
PSSM: P0      A      C      G      T
01     40     98     30    625      T
02     23     11    777     17      G
03    396     11     20      1      A
04      1      0      0    732      T
05      0      0    776      0      G
06    429      0      0      0      A
07      1    497      0      0      C
08      8      0    746      0      G
09      0      0      2    692      T
10      6    513      2      3      C
11    420      0      0      2      A
12      5     39     27    684      T
13     18    520      7     16      C
14    357     24    147     49      r
Type: Heterodimer
Binding TFs: BATF3_DBD (bZIP transcription factor, Basic region leucine zipper)
Q9NR55 (bZIP transcription factor, Basic region leucine zipper)
Q9NR55
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]


Hai T., Liu F., Coukos W. J., Green M. R. Transcription factor ATF cDNA clones: an extensive family of leucine zipper proteins able to selectively form DNA-binding heterodimers. Genes Dev. 3:2083-2090 (1989). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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