DNA Binding Motif

Accessions: 3q5f_A (3D-footprint 20231221)
Names: Transcriptional regulator slyA
Organisms: Salmonella enterica subsp. enterica serovar Typhimurium, strain LT2 / SGSC1412 / ATCC 700720
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the Salmonella transcriptional regulator SlyA in complex with DNA
Length: 10
Consensus: AGCTAAnnRT
Weblogo:
PSSM: P0 A C G T
01 78 6 6 6 A
02 0 0 96 0 G
03 6 78 12 0 C
04 0 0 0 96 T
05 96 0 0 0 A
06 84 6 6 0 A
07 24 24 24 24 n
08 24 24 24 24 n
09 66 0 24 6 R
10 12 12 6 66 T
Binding TFs: 3q5f_A (MarR family, MarR family, Winged helix DNA-binding domain)
Binding Sites: 3q5f_C
3q5f_D
Publications: Dolan K.T, Duguid E.M, He C. Crystal structures of SlyA protein, a master virulence regulator of Salmonella, in free and DNA-bound states. The Journal of biological chemistry 286:22178-85 (2011). [Pubmed]

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