DNA Binding Motif

						

			
Accessions: CN0011.1 (JASPAR 2024)

			
Names: LM11
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 24
Consensus: ATGGAAATGCTGACAsAmycTTAA
Weblogo: 
PSSM: P0      A      C      G      T
01    213     17     14     18      A
02     29     12      8    213      T
03     42      0    211      9      G
04     47      1    206      8      G
05    257      1      3      1      A
06    254      0      4      4      A
07    215      7     35      5      A
08     21     36     12    193      T
09     47      4    199     12      G
10      2    228      6     26      C
11      1      7      2    252      T
12     17      6    234      5      G
13    251      3      7      1      A
14     15    233      5      9      C
15    248      3      6      5      A
16     18     73    154     17      s
17    208     21     27      6      A
18     81     96     26     59      m
19     13    156     14     79      y
20     33    177      5     47      c
21     22     21      8    211      T
22     13     25     20    204      T
23    193     21     16     32      A
24    183     21     33     25      A
			
Publications: Xie X, Mikkelsen T.S, Gnirke A, Lindblad-Toh K, Kellis M, Lander E.S. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America 104:7145-50 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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