DNA Binding Motif

Accessions: 1zs4_ACD (3D-footprint 20231221)
Names: Regulatory protein CII
Organisms: Enterobacteria phage lambda, Escherichia phage lambda
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of bacteriophage lambda cII protein in complex with DNA
Length: 16
Consensus: GTTGCgnnnnTTTGCa
Weblogo:
PSSM: P0 A C G T
01 0 0 96 0 G
02 0 0 0 96 T
03 0 0 0 96 T
04 0 0 96 0 G
05 0 91 0 5 C
06 16 5 56 19 g
07 24 24 24 24 n
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 7 5 5 79 T
12 0 6 0 90 T
13 0 0 0 96 T
14 0 0 96 0 G
15 0 84 1 11 C
16 62 11 11 12 a
Type: Heterodimer
Binding TFs: 1zs4_A (Bacteriophage CII protein)
1zs4_C (Bacteriophage CII protein)
1zs4_D (Bacteriophage CII protein)
Binding Sites: 1zs4_T
1zs4_U
Publications: Jain D, Kim Y, Maxwell K.L, Beasley S, Zhang R, Gussin G.N, Edwards A.M, Darst S.A. Crystal structure of bacteriophage lambda cII and its DNA complex. Molecular cell 19:259-69 (2005). [Pubmed]

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